I have /usr/lib64/libtiff.so.3 linked to /usr/lib64/libtiff.so.4 which is linked to /usr/lib64/libtiff.so.4.3.2 in my Lucid 64bit install. See if libtiff.so.4.3.2 exists on your system in /usr/lib64 and if so:
sudo ln -s /usr/lib64/libtiff.so.4.3.2 /usr/lib64/libtiff.so.3
If not, find which libtiff you have installed and link to it:
find /usr -name libtiff.so.*
Peace,
Matt.
_____
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of houman.ebrahimi Sent: Saturday, May 29, 2010 6:04 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] shared library error
Hi,
I am constantly getting the same error when running recon-all on different subjects:
#@# Cortical ribbon mask Sat May 29 15:08:06 EST 2010 /home/houman/Desktop/freesurfer/subjects/PS2038/mri
mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance PS2038
mris_volmask.bin: error while loading shared libraries: libtiff.so.3: cannot open shared object file: No such file or directory Linux ubuntu 2.6.32-22-generic #33-Ubuntu SMP Wed Apr 28 13:28:05 UTC 2010 x86_64 GNU/Linux
recon-all exited with ERRORS at Sat May 29 15:08:07 EST 2010
I am running:
freesurfer-Linux-centos4_x86_64-stable-pub-v.4.5.0-full.tar.gz i7 processor - Ubuntu 10.04 (Kernel Linux 2.6.32-22-generic, GNOME 2.30.0)
I have referred to the suggested solutions at the following post: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07975.html but neither seem to correct the problem.
I am interested mainly in the data in the stats/aseg.stats file (which is generate on the step before the error). Is this error likely to affect the data in that file?
Thanks!
Houman