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Hi, I have 2 sessions of data acquired in the same day for each participant before and after the drug intake. I wonder how to analyse this with LME tool. I create design matrix X in 2 columns, first all ones and second the time differences(which are the same) and wonder if I need to only run the model with one random effect like
lhTh0_1RF = lme_mass_fit_EMinit(X,[1],Y,ni,lhcortex,3);
And what would be the next steps to get the stats and sig.mgh
Best regards, Amirhossein Manzouri