Hi,
I have problems with the convert/average procedure.
I acquired 124 sagittal slices with a SPGR sequence. Is the conversion from sagittal plane to coronal plane included in this step?
I tried to load .dcm and. img files. First of all, are they both compatible with mri_convert?
I tried with 1 volume file in analyze format, but Freesurfer didn't recognize the header and I had to set it manually. I noted that, even giving the command save, a new file .hdr was not created at this point: the .hdr file created when converting from dcm to analyze was only present in the folder. Then it asked also for .dcm files.
This is the error it gave me, after starting the volume interpolation:
reading /binfs/freesurfer_alpha/subjects/provaANAsag/mri/orig/001/1.2.840.113619.2.135.3596.375144.5930.1108451068i00001.hdr...
mri_read(): couldn't determine type of file /binfs/freesurfer_alpha/subjects/provaANAsag/mri/orig/001/1.2.840.113619.2.135.3596.375144.5930.1108451068i00001.hdr
/binfs/freesurfer_alpha/bin/Linux/mri_average: MRIread(/binfs/freesurfer_alpha/subjects/provaANAsag/mri/orig/001/1.2.840.113619.2.135.3596.375144.5930.1108451068i00001.hdr) failed
Thanks in advance,
Laura Bonzano
Luca Roccatagliata