Hi, I am trying to understand what happens when you run the recon-all -qcache command I noticed these three commands get run:
mris_preproc --s tester2 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh
mri_surf2surf --hemi lh --srcsubject tester2 --surfreg sphere.reg --sval /lab1/FreeSurfer/4.0.5/ms-mni/testing/tester2/surf/lh.thickness --sfmt curv --trgsubject fsaverage --tval ./tmp.mris_preproc.12176/tester2.1.mgh --noreshape
mri_concat ./tmp.mris_preproc.12176/tester2.1.mgh --o lh.thickness.fsaverage.mgh
My questions are: 1. Am I right to assume that the first command (mris_preproc) is just a wrapper script that calls the 2nd and 3rd commands? 2a. In the case above, does the 3rd command (mri_concat) simply copy the contents of tester2.1.mgh into lh.thickness.fsaverage.mgh. 2b. Is there a case when mri_concat will actually concat more than one thing into lh.thickness.fsaverage.mgh?
thanks, mishkin