Re: [Freesurfer] Projection on fsaverage5

Hi Marina

how do you project to fsaverage5? cheers Bruce On Wed, 8 Jan 2020, Marina Fernández wrote:

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Dear Freesurfer experts, I would like to convert the individual preprocessed EPI volume (that it is normalized to MNI152 space and without smoothing) to surface and project it on fsaverage5.  I used the following command: mri_vol2surf --mov EPI.nii --reg register.dat --hemi [l/r]h --projfrac 0.5 --interp trilinear --trgsubject ico --icoorder 5 --o EPI_surface.mgh

Is it correct? Then, I tried to project the surface in fsaverage5 and it seems to be rotated (it doesn't match). What should I do to project it correctly?

Thank you in advance. Best regards, Marina.