Re: [Freesurfer] error while running autorecon1 and autorecon2 in fs-v5.3

Could you provide the recon-all.log file?

-Zeke

On 05/30/2013 10:24 AM, Gennan Chen wrote:

Does 5.3 assume recon-all -all will always run first? Since ribbon.mgz will not get created till autorecon3. In V4, that is part of autorecon2 though.

Gen

On Thu, May 30, 2013 at 12:24 AM, Mehul Sampat <mpsampat@gmail.com mailto:mpsampat@gmail.com> wrote:

ps: i believe my error is the same as the one in this thread:


http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28047.html


Mehul


On Thu, May 30, 2013 at 12:13 AM, Mehul Sampat <mpsampat@gmail.com
<mailto:mpsampat@gmail.com>> wrote:

    Hi Folks,
    I am running recon-all with -autorecon1
    -autorecon2,  -nomotioncor -notal-check -nonuintensitycor
    (this is with fs version 5.3)
    it almost runs through but toward the end, when mri_segstats is
    called I get the error message:
    .../mri/ribbon.mgz, -1): could not open file
    any ideas why this could be occurring ?
    Thanks
    Mehul



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