yes, that is fixed now Bruce On Sat, 2 Apr 2016, Nathan Malitz wrote:
recently download and trying the dev version of freesurfer 6. it exited with this error
#@# Cortical Parc 2 lh Fri Apr 1 13:41:04 AEDT 2016 /usr/local/freesurfer6/subjects/test/scripts
mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 testphp lh ../surf/lh.sphere.reg /usr/local/freesurfer6/average/lh.CDatlas.2016-03-20 ../label/lh.aparc.a2009s.annot
setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.778 2016/02/03 18:58:39 fischl Exp $ GCSAread(/usr/local/freesurfer6/average/lh.CDatlas.2016-03-20): could not open file reading atlas from /usr/local/freesurfer6/average/lh.CDatlas.2016-03-20... No such file or directory mris_ca_label: could not read classifier from /usr/local/freesurfer6/average/lh.CDatlas.2016-03-20 No such file or directory
recon-all -s test exited with ERRORS at Fri Apr 1 13:41:08 AEDT 2016
This file doesn't exist in the directory, neither does the rh one, is it called something else or missing from the build?
I'd prefer not to download 9GB again, is it available by itself?
any ideas?
--
Nathan Malitz