Hi Freesurfer Team,
I am running Freesurfer 5.0 on Ubuntu 64-bit.
I want to change the SUBJECTS_DIR environment variable to point to an other location than inside the FREESURFER_HOME/subjects folder. When I do so, and run the recon-all command, 3 symbolic linked folders are generated for fsaverage/ lh.EC_average/ and rh.EC_average/.
How can I avoid this behaviour?
Thanks, Stephan