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Hi Athanasia,
I just wanted to let you know that I have an R package that reads a number of FreeSurfer binary and text file formats here:
https://github.com/dfsp-spirit/freesurferformats
It can also read annotation files. See the read.fs.annot() function.
All the best,
Tim
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
On March 23, 2020 at 12:00 PM Athanasia Monika Mowinckel a.m.mowinckel@psykologi.uio.no wrote:
External Email - Use CautionHi.
I’m closing in on a version of read_annotation.m that runs entirely in R.
I know I am not the only one wanting something not needing Matlab, and my initial idea was to contribute this version (acknowledging Bruce in the documentation as the author of the original function of course), to the Freesurfer R package (https://github.com/muschellij2/freesurfer).
I wanted to check in with you first on how and if this was ok, or if you have other suggestions to how this can be shared.
All the best,
Athanasia Monika Mowinckel Staff scientist
Phone: +47 22845022 e-mail: a.m.mowinckel@psykologi.uio.nomailto:a.m.mowinckel@psykologi.uio.no
Center for Lifespan Changes in Brain and Cognition (LCBC) Department of Psychology University of Oslo POB 1094 Blindern 0317 Oslo Norway
[LCBC] https://www.oslobrains.no/
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