Re: [Freesurfer] tkmedit

Thanks ZK,

I got the following message: bash: /usr/local/freesurfer/bin/tkmedit: /bin/tcsh: bad interpreter: No such file or directory

On Tue, Aug 12, 2014 at 5:29 PM, Z K zkaufman@nmr.mgh.harvard.edu wrote:

Ali,

I have not encountered this issue before. Could you please provide a screencapture or copy/paste of the terminal output when you type:

$> tkmedit -f $FREESURFER_HOME/subjects/sample-001.mgz

-Zeke

On 08/12/2014 06:48 AM, Ali Radaideh wrote:

...

Dear Zeke,

Thanks for your email. For some reasons your email went to the spam

folder

...

The build-stamps.txt file contents:

freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0

...

freeview does not work

Thanks, Ali

On Tue, Aug 5, 2014 at 11:44 PM, Z K <zkaufman@nmr.mgh.harvard.edu mailto:zkaufman@nmr.mgh.harvard.edu> wrote:

Just so its clear.. You have installed FreeSurfer on 15 Linux

machines

...

running Ubuntu? If so, can you please provide me with the contents of
the build-stamps.txt file in the FREESURFER_HOME directory?

Also, could you please inform me if freeview works by simply typing

the

...

freeview command?

$> freeview

-Zeke


On 08/05/2014 04:32 PM, Ali Radaideh wrote:
 > Dear FreeSurfer experts,
 >
 > I have installed FreeSurfer on multiple machines in our image
processing
 > lab (15 PC, Linux Ubuntu) and made sure that the setting are fine.
 > However, I have tried to test if freesurfer works or not by
typing the
 > following:
 >
 > tkmedit bert orig.mgz
 >
 >
 > Unfortunately, I have got the following error message on all PCs
 >
 > A segfault has occurred. This is not your fault,
 >    : but is most likely an unrecoverable error and has
 >    : made the program unstable.
 >
 >
 > ​So what would be the error​?
 >
 > Many thanks in advance,
 > Ali,
 >
 >
 > --
 > /Ali M. Al-Radaideh. PhD
 > Assistant Professor
 > Head of Department of Medical Imaging
 > Vice Dean of the Faculty of Allied Health Sciences
 > The Hashemite University,
 > Zarqa, Jordan
 > W.phone +962 5 3903333 ext.5422, 5355, 5364
 > Email: ali.radaideh@hu.edu.jo <mailto:ali.radaideh@hu.edu.jo>
<mailto:ali.radaideh@hu.edu.jo <mailto:ali.radaideh@hu.edu.jo>>
 > /
 > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/
 >
 >
 >
 > _______________________________________________
 > Freesurfer mailing list
 > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
 > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
 >
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...

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-- /Ali M. Al-Radaideh. PhD Assistant Professor Head of Department of Medical Imaging Vice Dean of the Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jo mailto:ali.radaideh@hu.edu.jo / /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/

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