Hi,
It repeats this several times and
MRISreadAnnotationIntoArray: vertex index out of range: 775162420 i=2E340A34, in_array_size=157940 annot file: CS/label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 775162420 i=2E340A34, in_array_size=157940 annot file: CS/label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 775162420 i=2E340A34, in_array_size=157940 annot file: CS/label/lh.aparc.annot
(...)
ERROR: Too many out-of-range vertex indices in MRISreadAnnotationIntoArray!
On Fri, May 18, 2012 at 4:53 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Hi Ines, this is a good thing to post to the list since there are others that might know better than me. Also, please include the full terminal output. thanks doug
On 05/18/2012 11:51 AM, Inês Violante wrote:
Thanks a lot!
Just another question: I get this message for one of my subjects using the previous command:
ERROR: Too many out-of-range vertex indices in MRISreadAnnotationIntoArray!
I must have done something wrong. Is there a way to correct this without having to run the whole recon-all again?
All the best,
ines
On Fri, May 18, 2012 at 4:46 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
yes, but you might want to change the name of the stats file so that you don't overwrite the one that is there doug
On 05/18/2012 11:39 AM, Inęs Violante wrote:
Thank you.
I've tried this command:
mris_anatomical_stats -f AC/stats/lh.aparc.stats -b -a AC/label/lh.aparc.annot -c ./aparc.annot.ctab AC lh pial
Would this be appropriate?
ines
On Fri, May 18, 2012 at 4:32 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
And you can get the full command line from the $subject/scripts/recon-all.log file doug
On 05/18/2012 10:41 AM, Michael Harms wrote:
The last argument of mris_anatomical_stats allows you to specify the surface to use (pial in your case)
cheers, -MH
NAME mris_anatomical_stats
SYNOPSIS mris_anatomical_stats [options]<subjectname> <hemi> [<surfacename>]
On Fri, 2012-05-18 at 15:18 +0100, Inęs Violante wrote: > > Hi, > > I need to know the surface area of the structures in the aparc file > but I want to obtain this measurement from the pial surface and not > the white matter surface. > How can I do that? > > Thank you a lot for your help. > > ines > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom > it is > addressed. If you believe this e-mail was sent to you in error and > the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you > in error > but does not contain patient information, please contact the sender > and > properly > dispose of the e-mail.
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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html