I'm using the Freesurfer output to register my DWI images to, on which I would like to apply graph theory on
(Sorry I'm a newbie in imaging so let me know if this is not the answer you're looking for)
Sent from phone Please excuse shortness or typographical errors
On 01 Mar 2017, at 02:42, "Douglas Greve" <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
what are you trying to do? get mean values of thickenss in each parcellation? If it is an annotation file, then you can use mri_segstats with --annot. Run it with --help to get examples
On 2/27/17 8:09 PM, Julie Hall wrote: Dear all,
I would like to use the Gordon Parcellation as segmentation atlas for my subjects. I have warped this atlas into individual subject space. Then I wanted to use mris_sample_parc to apply this parcallation, but I have a few questions..
1. Is this the right command to use? 2. When I use this command, I get the following error: could not open translation file /Applications/freesurfer/cma_parcellation_colors.txt
I don’t have this color table, should I create one (and how?)?
Thank you
Julie
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