Re: [Freesurfer] volume of different lobes of the brain....

You will need to run mri_aparc2aseg specifying your lobe annotation as the input (this parcellates WM based on proximity to the annotation). Then run mri_segstats on the output of that to get the WM volumes for each lobe. doug

Gonzalo Rojas Costa wrote:

Hi Douglas:

I was testing the commands that you sent me, but I only got the cortical volume, but I need the cortical+WM volume of each lobule... How can I do it ?...

Sincerely,

Gonzalo Rojas Costa

On Mon, Sep 26, 2011 at 11:01 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

...

You can run mri_annotation2label with --lobesStrict to get a lobe annotation. If that definition of "lobes" is good for you, then you can run mris_anatomical_stats to get the volume for each lobe. doug