I am trying to use qdec but it gave me this error. I don’t understand what is wrong because it read the diagnosis factor level of COS & NV but then says subject 00308 has invalid level of COS in diagnosis column.
Any ideas?
CHP-MP2:freesurfer brianweisinger$ qdec & [1] 7902 CHP-MP2:freesurfer brianweisinger$ Reading /Applications/freesurfer/lib/tcl/tkUtils.tcl
Using /Applications/freesurfer/lib/tcl/fsgdfPlot.tcl
Loading data table /Applications/freesurfer/subjects/qdec/qdec.table.dat... Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 24 Reading discrete factor levels from config file /Applications/freesurfer/subjects/qdec/gender.levels 'Female','Male', done Reading discrete factor levels from config file /Applications/freesurfer/subjects/qdec/diagnosis.levels 'COS','NV', done
ERROR: Subject 00308 has an invalid level 'COS' in the diagnosis column INFO: If 'diagnosis' is a discrete factor, then create a file named 'diagnosis.levels' containing the valid factor names one per line. Error loading the data table.