Hi Hyunwoo
Our build system seems to pick up the dynamic gfortran libraries for OSX. We'll post a fixed mri_robust_register ( and similar binaries which depend on that dynamic library) soon.
For a temporary fix:
save ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/krish/libgfortran.2.0.0.dylib to a path.. ( say ~/Downloads )
sudo mkdir -p /usr/local/lib
sudo cp ~/Downloads/libgfortran.2.0.0.dylib /usr/local/lib
cd /usr/local/lib
sudo ln -s libgfortran.2.0.0.dylib libgfortran.2.dylib
You need write permissions for /usr/local/lib . Let us know if it fixes this
-Krish
On May 25, 2011, at 12:30 PM, Hyunwoo Lee wrote:
Dear FreeSurfer
Hello, I am currently trying the following freesurfer version: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0<ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0.dmg
and I noticed the following. During the first step ( recon-all -i invol1 -i invol2 -subjid your_subject_name ), the console displays the following messages:
Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 INFO: SUBJECTS_DIR is ******* Actual FREESURFER_HOME /Applications/freesurfer Darwin mrs.local 10.7.0 Darwin Kernel Version 10.7.0: Sat Jan 29 15:17:16 PST 2011; root:xnu-1504.9.37~1/RELEASE_I386 i386 dyld: Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Applications/freesurfer/bin/mri_robust_register Reason: image not found Trace/BPT trap dyld: Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Applications/freesurfer/bin/mri_robust_register Reason: image not found Trace/BPT trap
I confirmed that the above message does not appear on the linux version of FS5.1.
So, I was wondering if the above situation will cause any problem down the pipeline? I just kept it running for ~18 hours and it seems to be going fine (i.e. at least no problem until the "mris_ca_label" step)
Thank you very much, and I look forward to hearing from you.
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