[Freesurfer] Group analysis with gray matter volume in FS 6.0

External Email - Use Caution

Hello,

Thanks in advance for your patience with what is probably a very basic question!

We would like to run a group analysis with gray matter volume at the voxel level following manual edits, and we are unsure which .mgz file is the proper output to use as the final output from manual edits. We do not have brain.finalsurfs.manedit.mgz files. Which subject file is the recommended output to use for a whole-brain voxel level group analysis after manual edits? I have included a screenshot of an example subject’s /mri directory below.

[A screenshot of text Description automatically generated]

Thank you, Marisa Ross

-- Marisa C. Ross, MPA PhD Candidate