Hi Experts,
I am extremely new to Freesurfer and I have a basic question that I didn't "freeview"
I have a big problem when I open "freeview" , "bus error" like under ..
Can you help me fix the this problem?
Best regards Rahyeong Juh
======================================== Process: freeview.bin [691] Path: /Applications/freesurfer/bin/Freeview.app/Contents/MacOS/freeview.bin Identifier: freeview.bin Version: 'latest trunk' ('latest trunk') Code Type: X86 (Native) Parent Process: tcsh [596]
Date/Time: 2010-09-11 16:47:28.575 +0900 OS Version: Mac OS X 10.6.4 (10F569) Report Version: 6
Interval Since Last Report: 3749 sec Crashes Since Last Report: 12 Per-App Crashes Since Last Report: 11 Anonymous UUID: 17FFC01A-48E3-4002-A7A6-D7F30E7CCFD5
Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 ??? 0000000000 0 + 0 1 libvtkRendering.5.2.dylib 0x02b3d1a9 vtkCarbonRenderWindow::CreateAWindow() + 281 2 libvtkRendering.5.2.dylib 0x02b3bfa4 vtkCarbonRenderWindow::WindowInitialize() + 52 3 libvtkRendering.5.2.dylib 0x02b3a435 vtkCarbonRenderWindow::Start() + 21 4 libvtkRendering.5.2.dylib 0x02aa11db vtkRenderWindow::DoStereoRender() + 27 5 libvtkRendering.5.2.dylib 0x02aa13a9 vtkRenderWindow::DoFDRender() + 153 6 libvtkRendering.5.2.dylib 0x02aa1832 vtkRenderWindow::DoAARender() + 98 7 libvtkRendering.5.2.dylib 0x02a9fc54 vtkRenderWindow::Render() + 644 8 freeview.bin 0x0011d547 wxVTKRenderWindowInteractor::OnPaint(wxPaintEvent&) + 151 9 freeview.bin 0x00407b53 wxAppConsole::HandleEvent(wxEvtHandler*, void (wxEvtHandler::*)(wxEvent&), wxEvent&) const + 65 10 freeview.bin 0x00452f30 wxEvtHandler::ProcessEventIfMatches(wxEventTableEntryBase const&, wxEvtHandler*, wxEvent&) + 212 11 freeview.bin 0x004532d4 wxEventHashTable::HandleEvent(wxEvent&, wxEvtHandler*) + 204 12 freeview.bin 0x00453f5e wxEvtHandler::ProcessEvent(wxEvent&) + 240 13 freeview.bin 0x003525e3 wxWindow::MacDoRedraw(void*, long) + 975 14 freeview.bin 0x00353985 wxMacWindowControlEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 815 15 freeview.bin 0x00354135 wxMacWindowEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 181 16 com.apple.HIToolbox 0x97c7af2f DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1567 17 com.apple.HIToolbox 0x97c7a1f6 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 411 18 com.apple.HIToolbox 0x97c7a055 SendEventToEventTargetWithOptions + 58 19 com.apple.HIToolbox 0x97ca20c5 HIView::SendDraw(short, OpaqueGrafPtr*, __HIShape const*, CGContext*) + 475 20 com.apple.HIToolbox 0x97ca1a19 HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 713 21 com.apple.HIToolbox 0x97ca1c8c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 22 com.apple.HIToolbox 0x97ca1c8c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 23 com.apple.HIToolbox 0x97ca1c8c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 24 com.apple.HIToolbox 0x97ca1c8c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 25 com.apple.HIToolbox 0x97ca1c8c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 26 com.apple.HIToolbox 0x97ca1c8c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 27 com.apple.HIToolbox 0x97ca0a3f HIView::DrawComposited(short, OpaqueGrafPtr*, __HIShape const*, unsigned long, HIView*, CGContext*) + 873 28 com.apple.HIToolbox 0x97ca0685 HIView::Draw(short, OpaqueGrafPtr*, unsigned long) + 83 29 com.apple.HIToolbox 0x97ca05d5 HIView::Render(unsigned long, CGContext*) + 45 30 com.apple.HIToolbox 0x97c9ff1d WindowData::PrepareForVisibility() + 145 31 com.apple.HIToolbox 0x97c9f4d8 _ShowHideWindows + 291 32 com.apple.HIToolbox 0x97d021fb ShowWindow + 79 33 freeview.bin 0x00346f86 wxTopLevelWindowMac::Show(bool) + 280 34 freeview.bin 0x00072060 MainApp::CreateMainWindow() + 96 35 freeview.bin 0x000727b5 MainApp::InitializeGUI() + 581 36 freeview.bin 0x0007301a MainApp::OnInit() + 1898 37 freeview.bin 0x00076abf wxAppConsole::CallOnInit() + 15 38 freeview.bin 0x0042b70c wxEntry(int&, char**) + 110 39 freeview.bin 0x00071f87 main + 23 40 freeview.bin 0x00003406 start + 54
Thread 1: Dispatch queue: com.apple.libdispatch-manager 0 libSystem.B.dylib 0x9382d942 kevent + 10 1 libSystem.B.dylib 0x9382e05c _dispatch_mgr_invoke + 215 2 libSystem.B.dylib 0x9382d519 _dispatch_queue_invoke + 163 3 libSystem.B.dylib 0x9382d2be _dispatch_worker_thread2 + 240 4 libSystem.B.dylib 0x9382cd41 _pthread_wqthread + 390 5 libSystem.B.dylib 0x9382cb86 start_wqthread + 30
Thread 2: 0 libSystem.B.dylib 0x9382c9d2 __workq_kernreturn + 10 1 libSystem.B.dylib 0x9382cf68 _pthread_wqthread + 941 2 libSystem.B.dylib 0x9382cb86 start_wqthread + 30
Thread 0 crashed with X86 Thread State (32-bit): eax: 0x00f101a0 ebx: 0x02b187eb ecx: 0x00000000 edx: 0x00efbd68 edi: 0x02b536f8 esi: 0x098ccc50 ebp: 0xbfffcda8 esp: 0xbfffcd7c ss: 0x0000001f efl: 0x00010206 eip: 0x00000000 cs: 0x00000017 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 cr2: 0x00000000
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(???) <3441F338-2218-6D36-3F95-3A16FBF6713D> /usr/lib/libSystem.B.dylib
Model: MacBookPro5,2, BootROM MBP52.008E.B05, 2 processors, Intel Core 2 Duo, 3.06 GHz, 4 GB, SMC 1.42f4 Graphics: NVIDIA GeForce 9600M GT, NVIDIA GeForce 9600M GT, PCIe, 512 MB Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB Memory Module: global_name AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8D), Broadcom BCM43xx 1.0 (5.10.91.27) Bluetooth: Version 2.3.7f1, 2 service, 19 devices, 1 incoming serial ports Network Service: Ethernet Adaptor (en2), Ethernet, en2 Network Service: Ethernet Adaptor (en3), Ethernet, en3 Network Service: AirPort, AirPort, en1 Serial ATA Device: ST9500420ASG, 465.76 GB Serial ATA Device: HL-DT-ST DVDRW GS21N, 403.3 MB USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8507, 0x24400000 USB Device: Apple Internal Keyboard / Trackpad, 0x05ac (Apple Inc.), 0x0236, 0x04600000 USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0x04500000 USB Device: Microsoft® 2.4GHz Transceiver v5.0, 0x045e (Microsoft Corporation), 0x074f, 0x04100000 USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x06100000 USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8217, 0x06110000
-------------------------------------------------- From: freesurfer-request@nmr.mgh.harvard.edu Sent: Wednesday, September 15, 2010 11:37 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Freesurfer Digest, Vol 79, Issue 25
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Today's Topics:
- substract clusters (Gabriel Go.Es.)
- mri_convert with Nifti1 files (roberto.viviani@uni-ulm.de)
- Re: substract clusters (Bruce Fischl)
- Re: substract clusters (Douglas Greve)
- how to fix the this problem when I open freeview. (Rahyeong Juh)
Message: 1 Date: Wed, 15 Sep 2010 10:49:02 +0000 From: "Gabriel Go.Es." gabriellbk@hotmail.com Subject: [Freesurfer] substract clusters To: greve@nmr.mgh.harvard.edu Cc: free surfer freesurfer@nmr.mgh.harvard.edu Message-ID: SNT124-W62EE767CFAEA3007C6C24ADC790@phx.gbl Content-Type: text/plain; charset="iso-8859-1"
Hello
I'm wondering about how to create a label from a cluster wich is significant from a group comparison, I mean, I have made group somparisons and i get some significant clusters, and I want to susbtract that significative cluster and transform it to a label file.
Best Regards
Gabriel