Hi Bruce,
I guess the problem I have at hand is how to map them to fsaverage. Do I have to convert the arrays somehow to nifti format first? I tried looking this up on the web but couldn't find a solution ...
Many thanks,
Jason.
On 04/02/2011 13:48, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Jason
why not map them all to fsaverage and display them on a common surface?
cheers Bruce
On Fri, 4 Feb 2011, Jason Connolly wrote:
Dear freesurfer experts:
I have been using matlab to analyze a retinotopic dataset.
However, the 3D volumes are not in standardized space (and I wish to display multiple maps from different subjects on one surface).
Although the initial segmentations were done in freesurfer, my question is:
Is it possible to take matlab arrays that contain 3D space anatomical coordinates and phase information (on a voxel by voxel basis) and display these on a standardized inflated freesurfer-generated surface?
If so, is the pipeline documented?
Many thanks,
Jason.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.