Hi all, I am running lgi analyses in 5.3 FS version (lion OSX)
one of my subjects failed with a typical message:
lGI for vertex number 39901 of the outer mesh is 1.8067 ... remeasuring lGI value for vertex iV = 40001. It may take a few minutes. WARNING -- Problem for vertex iV = 40001, lGI value is aberrantly high (lGI=42.8793)... ...lGI computation will be stopped. This may be caused by topological defects, check mris_euler_number on the pial surface.
Before running again the command mris_compute_lgi I want to check for the presence of topological defects
I have some questions: 1. which is the command line for the command mris_euler_number or - better - which are the surface files to control for? (lh.orig, lh.pial, lh.white, etc...)
2. I have performed the command check_subject and in all my subjects appear this message:
[host-001:~/Desktop/risonanze/studyfree] angelafavaro% check_subject subj061 CHECKING SUBJECT subj061 WARN: time for rh.white is older than rh.inflated WARN: lh.rh.sphere.reg is empty/missing WARN: time for lh.white is older than lh.inflated
What is the problem (if any)?
Thank you for any help
Angela