fsaverage
On 06/26/2014 12:56 PM, Tara Ann Miskovich wrote:
One last question. What would I put as the source subject? Do I need something there?
----- Original Message ----- From: "Douglas N Greve" greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, June 26, 2014 11:37:40 AM Subject: Re: [Freesurfer] Qdec Annotation to Individual
Try using this version of mri_surf2surf. I've also put example 6 below ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2surf
You can give it the full path to the input annotation
doug
Convert the annotation for one subject to the surface of another
mri_surf2surf --srcsubject subj1 --trgsubject subj2 --hemi lh \ --sval-annot $SUBJECTS_DIR/subj1/label/lh.aparc.annot \ --tval $SUBJECTS_DIR/subj2/label/lh.subj1.aparc.annot
This will create $SUBJECTS_DIR/subj2/label/lh.subj1.aparc.annot. The --sval-annot flag will also change the map method to nnf so that the annot indices are not averaged. Note: this is not a substitute for running the cortical parcellation! The parcellations that it maps to the new subject may not be appropriate for that subject.
On 06/26/2014 12:34 PM, Tara Ann Miskovich wrote:
Thank you for your response Doug. On my help it only goes up to example 5. I am trying to figure out how to do it without a subject1 since the annotation is in the qdec directory.
Thanks
----- Original Message ----- From: "Douglas N Greve" greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, June 26, 2014 11:05:49 AM Subject: Re: [Freesurfer] Qdec Annotation to Individual
You can use mri_surf2surf with the --sval-annot option. Run it with --help and look at example 6 doug
On 06/26/2014 11:04 AM, Tara Ann Miskovich wrote:
Hello,
I was hoping someone could help me map with mapping my annotation from my significant qdec clusters into each individual space.
Thanks!
Tara
Tara A. Miskovich, B.A. Affective Neuroscience Laboratory Department of Psychology University of Wisconsin-Milwaukee 334 Garland Hall miskovi2@uwm.edu
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