Re: [Freesurfer] Segmentation of hippocampus(left), grey and white matter regions.

Try running recon-all on the unskull stripped data. Alternatively, if  you just want hippo you can run mri_synthseg or samseg

On 10/31/2022 5:32 AM, PRASAD D wrote:

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Hello everyone. I’m new to FREESURFER

I would like to segment the sMRI images.

I have extracted(skull stripped) the brain region from the sMRI image using BET.

but i'm interested in hippocampus(left), grey and white matter regions.

Can you please guide me how to segment those specific regions automatically.

Thanks in advance.

-- *Yours sincerely* *D.PRASAD* *Full Time Research Scholar(QIP)* *Dept. of ECE, PTU.*

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