Hi Bruce,
Thanks, that indeed includes most of the roi's I want to include. What if there are some area's that are not in that list? Is there a way of adding areas?
Best,
Marja
On Fri, May 27, 2016 at 10:26 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Marja
what ROI do you mean? We generate lots of them, and tabulate the thickness within each one. Look for example in <subject id>/stats/aparc.stats
cheers Bruce
On Fri, 27 May 2016, Marja Caverlé wrote:
Hi all,
So I ran a recon-all -all on one of my subjects, and it completed without errors (according to the log). Now I would like to get cortical thickness numbers from this subject, but when I open the tutorial regarding this, it says it assumes that you already have a roi mask and a T1 in the same coordinate space as the roi mask.
Did the recon -all -all by any chance create these files? And if not, how can I?
So basically the question is; what do I have to do after recon -all -all in order to get cortical thickness numbers in roi's of my subjects?
Thanks in advance.
Marja
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