Hi Matt Looks like there is something wrong with the lta mapping tp1 to the base. Can you send the full log?
Thanks Martin
On Oct 30, 2009, at 23:32, Matt Erhart mattjerhart@gmail.com wrote:
Hello everyone,
%% After running this command with v4.5 and v4.4: recon-all -base FREESURFERRECON_TEST_005_S_ 0221BASE45 -tp FREESURFERRECON_TEST_005_S_0221_45_20070321.105506_1 - tp FREESURFERRECON_TEST_005_S_0221v2_45_20061006.104318_1 -all -force
%% I get this error: %%%%%%%%%% mri_concatenate_lta -invert1 FREESURFERRECON_TEST_005_S_0221_45_20070321.105506_1_to_FREESURFERRECON_TEST_005_S_0221BASE45. lta identity.nofile FREESURFERRECON_TEST_005_S_0221BASE45_to_FREESURFERRECON_TEST_005_S_0221_45_20070321.105506_1. lta
invert the first LTA before applying it MatrixInverse: NULL input matrix!
Read individual LTAs %%%%%%%%%%
Any ideas on how to solve this?
A side note for other troubleshooters: getting to this stage takes around 5 minutes with 2 subjects and around 90 minutes with 3.
thanks! Matt _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer