Hello FreeSurfer Developers,
I'm attempting to parse stats files with regular expressions. Everything seems to work in all of the aseg and wmparc files, but the {lh,rh}.aparc{,a2009s,DKTatlas,pial}.stats files are missing a comma after "CortexVol" on line 25. This causes my regex to miss that measurement on each pass. All other lines match my regex perfectly, only CortexVol misses the comma.
This is a new field in version 6; it does not exist in versions 5.2.0 and 5.3.0.
This is consistent across all subjects I've viewed, and there are no errors to dig into, but I've attached the recon-all.log file and a few stats files from one of them in case they're of any use.
1) FreeSurfer version: freesurfer-Linux-centos6_x86_ 64-stable-pub-v6.0.0-2beb96c 2) Platform: external linux cluster, unsure exactly 3) uname -a: Linux sequoia 3.12.67-60.64.24-default #1 SMP Fri Dec 9 14:35:11 UTC 2016 (8154761) x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached, along with a few aparc files.
I have added the comma using sed to all of the aparc files in our system, but I hope this is helpful in removing bugs for future use.
Best wishes, Mike Schmidt