Hi Allison and Bruce,
Thanks for your kind explanations and the website mentioned http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat. I am curious why I can not directly find this website from the main interface http://surfer.nmr.mgh.harvard.edu/fswiki. Is there a website listing all the great links. Thanks.
Liang
2010/3/15 Allison Stevens astevens@nmr.mgh.harvard.edu
Liang, You can find instructions on how to do this here: http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
Sometimes using mri_convert will cause the orientation to be off so you may want to follow those instructions instead. Allison
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On Sat, 13 Mar 2010, Bruce Fischl wrote:
Hi Liang,
you should just be able to use the -rl (reslice like) option in mri_convert and give the orig/001.mgz as the target.
cheers Bruce
On Fri, 12 Mar 2010, liang wang wrote:
Hi FS experts,
I find that FS does make a great skullstrip and extract a perfect brain (ie. brain.mgz). I am thinking to register this brain to MNI152 standard space using FSL. Does anyone know how to transfer the brain (256.^3, 1mm ) to subject-specific native space (224*256*176, 1mm). Thanks in advance.
Liang
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