Hi Juergen,
The error you are getting here:
ERROR: Flag -Patient03_2001 unrecognized. -Patient03_2001 -all ERROR: Flag -Patient03_2002 unrecognized. -Patient03_2002 -all
Is because you are using '-Patient03_2001' as a flag in your command, which is not a valid flag. What is it that you are trying to run? I am making a guess that you might be trying to run the entire recon process on your subject, if that is the case you want to use the command:
recon-all -all -s Patient03_2001
Jenni
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Juergen Haenggi Sent: Tuesday, March 20, 2007 7:35 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Two problems
Dear Freesurfer users
I have two problems:
I upgraded Freesurfer (from Linux CentOS4 v3.0.3 to v3.0.5) and recognized that the "foreach" command do not work any longer. The following error occured:
ERROR: Flag -Patient03_2001 unrecognized. -Patient03_2001 -all ERROR: Flag -Patient03_2002 unrecognized. -Patient03_2002 -all
The other problem concerns the selection of the tcsh shell on Mac OS X. I can change from a bash to a tcsh shell.
Thanks for help in advance Best regards Juergen
--------------------------------------------------------------------------- Juergen Haenggi, Ph.D. student Department of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) ---------------------------------------------------------------------------
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