Re: [Freesurfer] ROI functional & anatomical cross

You can create a binary mask of the ROI, then use mri_mask to mask out the non-ROI part from the fMRI. does that work? doug

On 07/11/2012 11:25 AM, Huiting Liu wrote:

Hello,

I'm trying to do an ROI analysis that crosses the group-level functional activation with specific anatomical structures. Currently the clusters found for our group-level functional activation are too large and need to be separated into many structures. Is there a command I could use that would cross the group level map with each cortical structure generated by freesurfer's recon-all?

Thanks.

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