It will take all edits you have made into account when you rerun it.
On 6/25/2024 1:00 PM, Blujus, Jenna wrote:
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Hi all,
I have processed a set of T1w data through recon-all (v7.3.2) and am now making manual edits, if necessary. I have had a few cases where control points, wm.mgz, and brainmask edits are needed and incorporated via 'recon-all -autorecon2-cp -autorecon3 -s ${id}'. However, upon inspection of the updated outputs following the initial manual edits, further edits are required only to the wm.mgz to fix new topological errors.
To incorporate the second round of wm edits, would I need to rerun recon-all from the control point stage to incorporate */_all_/* edits (i.e., first round [control points, wm, brainmask]) or just from the wm stage with recon-all -autorecon2-wm -autorecon3 -s ${sid}? Essentially, I am asking if each time recon-all is re-run does it progressively build off of previous edits?
Let me know if you need any clarification.
Thanks in advance, Jenna
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