7 Nov
2018
7 Nov
'18
9:37 a.m.
When you ran mkanalysis-sess, did you specify two event types? You only have one non-null event in your paradigm file.
On 10/28/2018 08:57 AM, Francesca Strappini wrote:
External Email - Use Caution
Thanks! Now it's loading correctly my event file. However, when I run selxavg3-sess I get this error message:
selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF -no-con-ok
outanadir = /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF/bold/FF-MonkeyCassis.sm03.lh Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points Excluding 2 points parfiles condition id list: 1 ERROR: found 1 non-null conditions, expected 2
ERROR: fast_selxavg3() failed\n
This is my even file:
0 1 32 1 ON 32 0 32 1 OFF 64 1 32 1 ON 96 0 32 1 OFF 128 1 32 1 ON 160 0 32 1 OFF 192 1 32 1 ON 224 0 32 1 OFF
Thanks for the help! Best Francesca
Il giorno gio 3 mag 2018 alle ore 00:49 Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> ha scritto:
oops, sorry. Looks like it is having a problem loading your paradigm file. Check that. If the error does not pop out to you then send it to me. On 05/02/2018 10:06 AM, Francesca Strappini wrote: > Hi, sorry, maybe my last email got lost. Is there anything I can try > to fix this problem with selxavg3-sess? > > Thanks! > Best > Francesca > > 2018-04-24 20:35 GMT+03:00 Francesca Strappini > <francescastrappini@gmail.com <mailto:francescastrappini@gmail.com> <mailto:francescastrappini@gmail.com <mailto:francescastrappini@gmail.com>>>: > > Thank you for the reply! > I deleted the contrasts and run this command line: > > selxavg3-sess -a FF-MonkeyCassis.sm03.rh -s MonkeyCassis-FF -no-con-ok > > > ------- matlab output -------------------- > MATLAB is selecting SOFTWARE OPENGL rendering. > > < M A T L A B (R) > > Copyright 1984-2016 The MathWorks, Inc. > R2016b (9.1.0.441655) 64-bit (glnxa64) > September 7, 2016 > > > To get started, type one of these: helpwin, helpdesk, or demo. > For product information, visit www.mathworks.com <http://www.mathworks.com> > <http://www.mathworks.com>. > > >> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > >> /usr/local/freesurfer/matlab/MRIread.m > >> >> >> starting fast_selxavg3b > > > #@# MonkeyCassis-FF ############################### > /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF > ------------------------- > $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ > ------------------------- > outtop = /usr/local/freesurfer/fsfast/Monkeys > Extension format = nii.gz > INFO: key nSliceGroups unrecognized, line 11, skipping > Subscripted assignment dimension mismatch. > > Error in fast_ldpar4 (line 97) > par4(nthrow,1) = tonset; > > Error in flac_customize (line 121) > [par partype] = fast_ldpar4(parpath); > > Error in fast_selxavg3b (line 129) > flac0 = flac_customize(flac0); > > >> ------------------------------------------ > ERROR: fast_selxavg3() failed\n > > > 2018-04-24 20:27 GMT+03:00 Douglas Greve <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu> > <mailto:dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>>: > > Try deleting the contrasts (.mat files) and rerunning > > > On 4/24/18 5:48 AM, Francesca Strappini wrote: >> >> >> Dear FreeSurfer experts, >> >> I'm trying to analyze some monkey functional data. I got this >> error message with selxavg3-sess. >> >> I run the following commands: >> >> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast >> ON-vs-OFF -a 1 -c 0 >> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.rh -contrast >> ON-vs-OFF -a 1 -c 0 >> preproc-sess -surface MonkeyCassis lhrh -fwhm 3 -s >> MonkeyCassis-FF -fsd bold -per-session >> selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF >> >> >> ------- matlab output -------------------- >> MATLAB is selecting SOFTWARE OPENGL rendering. >> >> < M A T L A B (R) > >> Copyright 1984-2016 The MathWorks, Inc. >> R2016b (9.1.0.441655) 64-bit (glnxa64) >> September 7, 2016 >> >> >> To get started, type one of these: helpwin, helpdesk, or demo. >> For product information, visit www.mathworks.com <http://www.mathworks.com> >> <http://www.mathworks.com>. >> >> >> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m >> >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m >> >> /usr/local/freesurfer/matlab/MRIread.m >> >> >> >> starting fast_selxavg3b >> >> >> #@# MonkeyCassis-FF ############################### >> /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF >> ------------------------- >> $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ >> ------------------------- >> outtop = /usr/local/freesurfer/fsfast/Monkeys >> Extension format = nii.gz >> INFO: key nSliceGroups unrecognized, line 11, skipping >> 1 ON-vs-OFF.mat >> Subscripted assignment dimension mismatch. >> >> Error in fast_ldpar4 (line 97) >> par4(nthrow,1) = tonset; >> >> Error in flac_customize (line 121) >> [par partype] = fast_ldpar4(parpath); >> >> Error in fast_selxavg3b (line 129) >> flac0 = flac_customize(flac0); >> >> >> ------------------------------------------ >> ERROR: fast_selxavg3() failed\n >> >> Thank you! >> Best >> >> Francesca >> >> -- >> Francesca Strappini, Ph.D. >> Neurobiology Department >> Weizmann Institute of Science >> 234 Herzl Street, Rehovot 7610001 Israel >> Tel.: +972 58 444 2584 >> E-mail: francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il> >> <mailto:francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > The information in this e-mail is intended only for the person > to whom it is > addressed. If you believe this e-mail was sent to you in error > and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline > <http://www.partners.org/complianceline> . If the e-mail was > sent to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > -- > Francesca Strappini, Ph.D. > Neurobiology Department > Weizmann Institute of Science > 234 Herzl Street, Rehovot 7610001 Israel > Tel.: +972 58 444 2584 > E-mail: francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il> > <mailto:francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il>> > > > > > -- > Francesca Strappini, Ph.D. > Neurobiology Department > Weizmann Institute of Science > 234 Herzl Street, Rehovot 7610001 Israel > Tel.: +972 58 444 2584 > E-mail: francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il> > <mailto:francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il>> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
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