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Hello Freesurfer Community,
I want to view my cortical thickness estimates (I calculated standard deviations for different subjects) on a 3D file. I thought I could replace the lh.thickness part in the following code by my own estimations:
freeview -f \ /Datasets/sSUBJ_DAY_01_01/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \ /Datasets/sSUBJ_DAY_01_01/surf/lh.pial:annot=aparc.a2009s.annot:name=pial_aparc_des:visible=0 \ /Datasets/SUBJ_DAY_01_01/surf/lh.inflated:overlay=lh.thickness.asc:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 \ /Datasets/sSUBJ_DAY_01_01/surf/lh.inflated:visible=0 \ /Datasets/sSUBJ_DAY_01_01/surf/lh.white:visible=0 \ /Datasets/sSUBJ_DAY_01_01/surf/lh.pial \ --viewport 3d
I tried loading a binary mat, as lh.thickness is a binary file as well. I got the following error:
couldn't determine type of file
Can you clarify what file structure the thickness overlay file should be, so that Freesurfer is able to read the thickness information ?
Thank you so much.
(addional info: mat file 163842x1 double)