External Email - Use Caution
Dear Bruce,
thanks for your response.
my SUBJECTS_DIR is set to: /Users/davidemomi/Downloads/Broad_60_AV, which is actually where the output of recon-all is located.
the file wm.mgz exists and is in the $SUBJECTS_DIR/mri directory
Thanks again
Il giorno ven 24 ago 2018 alle ore 16:49 Bruce Fischl < fischl@nmr.mgh.harvard.edu> ha scritto:
Hi Davide
does that file exist? What is your SUBJECTS_DIR set to?
cheers Bruce On Fri, 24 Aug 2018, Davide Momi wrote:
External Email - Use CautionDear FreeSurfer,
I have a problem when I use mris_anatomical_stats. It gives me an error
saying that it couldn't read
the input volume which is the wm.mgz file. would you please help me how I should fix this problem? this is the command which I used:
mris_anatomical_stats -a label/lh.aparc.annot -b 60_AV rh
computing statistics for each annotation in label/lh.aparc.annot.
reading volume
/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz...
mghRead(/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz, -1):
could not open file
mris_anatomical_stats: could not read input volume /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz
Thanks in advance
Davide
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