Hi Banu
can you send us an image to show us what you mean? cheers Bruce On Tue, 5 Mar 2019, Banu Femir wrote:
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Hi, I've a problem about surface placement. For my PhD thesis, I've been analyzing T1 images of 103 AD, MCI and SCI subjects. I'm using FS 6.0 stable version on Linux.
Some of my data, especially AD data have a surface problem. White matter includes both white and gray matter, and CSF is included as a gray matter. So, it looks like the surfaces has shifted. (The MR images do not have any lesion).
Until now, I tried to clean dura for one subject, but nothing changed. I also run reconall again for another subject, got the same result. All done in FreeView.
I do not know what to do in this case. It looks like troubleshooting does not solve my problem, since mine is very complicated.
I would be so happy if anyone has an idea of what can I try to do?
Many thanks in advance,
Banu.