External Email - Use Caution
Yujing Yes, we have run this successfully with other participants (although it was a while ago). Attached is the recon-all.log thanks for your help! Tracy
On Sun, Mar 5, 2023 at 1:21 PM Tracy Riggins riggins@umd.edu wrote:
Greetings FS experts:
We are trying to run recon-all -s -qcache on a handful of brains processed in freesurfer v5.1.0. (it's an old dataset...5.1 makes the most sense for our purpose.)
The error is below:
[image: image.png]
#@# 1/1 HMN080 Fri Mar 3 12:14:44 EST 2023 --------------
mri_surf2surf --srcsubject HMN080 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.51930/HMN080.1.mgh --sval /export/data/seahorse_ncdl/HMN/data/HMN080/surf/lh.thickness --sfmt curv --noreshape --no-cortex Segmentation fault (core dumped) Linux seahorse.umd.edu 3.10.0-1160.80.1.el7.x86_64 #1 SMP Sat Oct 8 18:13:21 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s HMN080 exited with ERRORS at Fri Mar 3 12:14:48 EST 2023
Can you assist? OR perhaps tell us where to find the core dump file, which may have more information?
-- Tracy Riggins, Ph.D. Pronouns https://secure-web.cisco.com/1BJjJcQxKNLIaCFu22wSIhw4J2HXaMTFHKa3EvwXwiWOsI-o-LpfF5pol_RKpxwdVkdDYQgAwXmuPljh6sZwiDfkOZIoneQCPedKzWYasnIuo-XPeB9Y9uzDSaX1jxI-eN-_ZKmh0oPf6CH3j4Wwi6W37hvR8UnSjkngfGWHCKwyLhTfWBSLMtCywA-CJAviZ159Frzf_dbI5A_WwLKlAPC0zpDRIWbt-kcQPRwZuMZrHVP7vo3B1bifOWZmrJjl8hRA35G0OMYJPU2ddLz20U7e9PstjS1GhqA84ODwcs0b2O_Z0o88KfejGeaYulNFIyFHJTEfapDAhuFnhRtDKqg/https%3A%2F%2Fwww.mypronouns.org%2F: she/her/hers Associate Professor of Psychology 4094 Campus Drive, Biology/Psychology Building 2147J University of Maryland, College Park, MD 20742 Zoom Meeting ID: 6751666548 https://secure-web.cisco.com/17zRQjJmc6t5bsoQLDva8CSSs_NUC2W_sMwfIfN2BPhVnJgiQ71xYoZhfT29xFnmafT3pUIIuDe3Ld5iN9qWQoSjftJMtuyyOb_zyKI4q55L-9yinfYAhmDG6JXjSuVyudDZQDik8KtL2I2AIdsu-tmOFSjRQnBkUa6DcMpNVVJqrIpGPX5yP0A0OXGncGlEkKUSL79AmMRlyCQTW2jFFO0QIP07GeK2IvNbixp1TS4RosI61eySxp0xUBECT3abKFiB3MOiuuLPKfqbuGr-aVrZxs80CEcSPnr_0wLHB-js1_Yk7peKBZfySmlhQRQ_ncIkZlaZHoKQX_Cn-T4jTBg/https%3A%2F%2Fumd.zoom.us%2Fj%2F6751666548
Research info: http://secure-web.cisco.com/13PxOpSSN-OezAn8kJYGUP78trLkAt2fkP-uOpAnKfGJKPVn... and https://secure-web.cisco.com/1BXFTcFoA2VIyBMSETXZnWwF11uZanLuyKIGfLih64LS_Lh... Black lives matter in academia https://secure-web.cisco.com/1NxTSEdxQ9MYGuoKqvkJ-caLtcaskR7bh4CKh6dhLlgZAkV5dvgPvAeeULxYQb0h6f0qC8YcDAdD3GAtVJnO2jP2zoimhX8H1uld8_ELSztwwybZ5_nKscDf6B4r1AWBVVYXD9oU0-WVP8Uq1IZn-UXTrrYZnZ0Jem0NRRVoNWZs_Fic5Qjk0F-WYOLmBOIkEIsQaAxRGUTtVn8DXEONgVBxbpDyeqIsfumOtsjF-o5abea9QB9l4Tk0pNk3ZsPfYJfaMHrb9859U0gB0fJ75y0mxCi73YuOjSiUFaFk4-BT6XydJ0mLiP1xEkaU7vW7l6oVNcxYh0ocvtzyIWIHj3w/https%3A%2F%2Fonlinelibrary.wiley.com%2Fdoi%2Ffull%2F10.1111%2Fgwao.12555 LGBTQIA+ Ally https://secure-web.cisco.com/1lyG0FYIXHIERBTcGUnTN7IxEMtyQDR_Fnx92czcibqr-JtBgktJ5ThB6ahyJLRmznfkdWaHU03EF6CH1dz5199XIjZDgT-_OPxbq7d08-BWxAKWNeF3ObY8-1N1z779uUgxjzS4VE2k2nli_6a8iZz8y-q_D9Zri-6pQAxdnBL2epKNSweQrbqu6-4CGHXtypH3OPCel4VCGe3866oYJHH8RLVyGQmf8qWpqDweA5sLuEhQa-1E2uHgE8QO5I3HPz24U5oAJqkDZGM-5OaEQzlY2EMtr-Olqy-tr3HGsInQfOx23Pf18ZJx5xUldwTlO_PTyp6gbb1dORVypPKN12w/https%3A%2F%2Fwww.accreditedschoolsonline.org%2Feducation-teaching-degree%2Flgbtq-youth%2F
