You can run it with --help to get more info, let me know if you have questions after that On 02/01/2013 05:08 PM, Franklin, Crystal G wrote:
Which options should I use when running mri_surf2vol?
Crystal
On 2/1/13 1:08 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
QDEC will create an output folder. In that folder, there will be a folder for each contrast. In the contrast folder, there will be a sig.mgh file. this has the -log10(p) significance values. You can convert this to nifti with mri_convert, but it will still be on the surface. If you need it in a volume, you can use mri_surf2vol doug
On 02/01/2013 09:34 AM, Franklin, Crystal G wrote:
Freesurfer,
I ran a group comparison using qdec and got my results showing the differences in the thickness between the groups. I want to take these results I see in the viewer and convert them to nifti format so I can use them in another software called MANGO. Which files do I need to convert that shows the contrast differences?
Thank you, Crystal
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