5 Oct
2020
5 Oct
'20
4:49 a.m.
External Email - Use Caution
Hello Freesurfer Team
I am trying to segment the macaque brain. After skull strip, control point adding and white matter editing, I try to inflate the brain surface.
My command is :recon-all -s monkey2 -autorecon2-wm -noaseg -cc-crs 100 85 112 -pons-crs 99 105 80
The output error is:need seg for ripping. But i used the noaseg flag for macaque brain segmentation. Can you help me explain this and how to solve this problem?
I have attached the recon-all.error and brainmask.mgz and wm.mgz . Thanks in advances!
All best,
Jie