Hi Michael
can you send us the full command line and screen output of any command that you ran that fails and you want our help with?
thanks Bruce On Wed, 14 Jun 2017, Michael Davies wrote:
Hi, the server has been down and i currently cannot access my account. I did however try putting freeview -f at the beginning before without any luck but i will try again when possible.
Kind regards, Michael
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ruopeng Wang rpwang@nmr.mgh.harvard.edu Sent: 14 June 2017 15:54:15 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] viewing surfaces in 3D using freeview You didn't call freeview there... Try adding "freeview -f " at the beginning of the command.
On 06/14/2017 11:02 AM, Michael Davies wrote: Hi Ruopeng, this is the command i ran and resulting error message;
bash-4.1$/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=apar c.annot:name=pial_aparc:visible=0 \
/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:overla
y=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 \
projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:visible
=0 \
/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.white:visible=0
\
projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial \ --viewport 3d
bash:/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=apar c.annot:name=pial_aparc:visible=0: No such file or directory
Kind regards, Michael
On 14 Jun 2017, at 15:05, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu> wrote:Please copy and paste the full command line you ran and the error message you got.
Thanks, Ruopeng
On Jun 14, 2017, at 9:26 AM, Michael Davies <Michael.davies30@hotmail.com> wrote:Hello i am trying to access the data files in 3D but i am having problems opening the files using the command syntax given on the website. I have set my own pathway using my own data;
“/projects/pbic1030/Micahel/subjects/Subj1/fsaverage/surf/”
However, one i progress with the code past this point i am unable to load the data and get the error message No file or directory in the terminal even though this is the correct pathway to the data.
When i enter the rest as follows this is when the problems begin to occur lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \
Could you please advise me how to proceed?
Kind regards, Michael University of Birmingham _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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