Hi all FreeSurfer Experts, I'm a young researcher, PhD student of the University of Padua with a degree in Mathematics. I'm trying to use FreeSurfer for analyze a 3D image MRI, DICOM format (I have NIFTI too) to calculate brain volume.
I downloaded the software from your site following the instructions for a Linux CentOS 4.
Now my questions are: I have a classical MRI 3D image file, how do I send the files to FreeSurfer?
What are the instructions that I have to write in the bash? Is there a GUI to calculate brain volume?
Any help is appreciated, Thanks!
Michele.