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Hello FreeSurfer Developers,
I'm attempting to run the segmentation of hippocampal subfields, as described on the segmentation of hippocampal subfields tutorial (https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields), however, I get the following error when I ran the segmentation of hippocampal subfields command:
LD_LIBRARY_PATH is .:/usr/local/freesurfer/MCRv80/runtime/glnxa64:/usr/local/freesurfer/MCRv80/bin/glnxa64:/usr/local/freesurfer/MCRv80/sys/os/glnxa64:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64:
Invalid MEX-file '/tmp/MCR_183405186/.mcrCache8.0/segmen0/autofs/cluster/koen/eugenio/GEMS-Release-linux/bin/kvlGEMSMatlab.mexa64': /tmp/MCR_183405186/.mcrCache8.0/segmen0/autofs/cluster/koen/eugenio/GEMS-Release-linux/bin/kvlGEMSMatlab.mexa64: undefined symbol: _ZZN3gmm13warning_level5levelEiE6level_
Error in kvlClear (line 11) Error in segmentSubjectT1_autoEstimateAlveusML (line 100) MATLAB:invalidMEXFile
I've searched the list and I found that a similar problem has been reported, however, without any conclusion. Dose anyone have any thoughts on how to trouble-shoot this error message?
(1) FreeSurfer version : freesurfer-Linux-centos6_x86_64-v.6.0
(2) Matlab(R2012b)
Thank you! Best Regard,
EvelynChi