Did you try passing --olab a full path?
Knut J Bjuland wrote:
Hi
I use mri_surfcluster -olab --subject fsaverage --in sig.mgh --hemi ?h to produce label for the areas indicated by mri_glmfit. Then I use label and mean follow by the python script.
cheers Knut J
I use
Date: Mon, 24 Oct 2011 10:43:02 -0400 From: greve@nmr.mgh.harvard.edu To: knutjbj@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] roi analysis from label or annotation
It's very hard to tell what you are doing without a command-line. Generally, you can pass the full path of a label to surfcluster to make it save it in a particular location. doug
Knut J Bjuland wrote:
I am working on roi analysis. I have made a label using
mri_surdcluster and used mri_label2label to
copy the label from fsaverage to each individual subject. The next
step would be to use
mris_anatomical_stats to calculate stats for each subject. I used
a Python to merge the txt file from
mris_anatomical_stats.
Is it possible to force mri_surfcluster to save the label another
dir than fsaverage?
Can I use convert roi label to annotation and then use aparc2stats or similar command to get group statics?
Cheers Knut J
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