External Email - Use Caution
Thanks, it works. Does the code mean that it only allows labels under 300 to pass through?
Best, Qi
On Fri, Jun 5, 2020 at 12:37 PM Iglesias Gonzalez, Juan E. < JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:
Dear Qi,
You can try:
mri_threshold -U [lr]h.hippoAmygLabels-T1.v21.mgz 300 [lr]h.hippoLabelsNoAmyg-T1.v21.mgz
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Zeng, Qi" < qi.zeng@icahn.mssm.edu> *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Friday, June 5, 2020 at 11:54 *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Get hippocampus segmention from [lr]h.hippoAmygLabels-T1.v21.mgz
External Email - Use Caution *Hi,
I conducted longitudinal segmentation of both hippocampus and amygdala from running segmentHA_T1_long.sh. But is it possible for me to segment only the hippocampus region "mgz" from the stored [lr]h.hippoAmygLabels-T1.long.v21.mgz ?
Best,
Qi
--
Ph.D. candidate
Icahn School of Medicine at Mount Sinai
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