Try
mri_vol2vol --targ fsaverage.DKT40+aseg.nii --mov /usr/local/fsl/data/standard/MNI152_T1_2mm.nii.gz --o fsaverage_MNI_DKT40+aseg.nii --interp nearest --reg /Applications/freesurfer/average/mni152.register.dat --inv
On 6/22/16 12:45 AM, Skyler Gabriel Shollenbarger wrote:
Hi FS community,
I am trying to convert fsaverage to MNI space. The command did not produce computation errors, however the output file is upside down (not L-R reversed). Any thoughts on how to orient the output correctly (see attached pictures for output file)?
mri_vol2vol --mov fsaverage.DKT40+aseg.nii --targ /usr/local/fsl/data/standard/MNI152_T1_2mm.nii.gz --o fsaverage_MNI_DKT40+aseg.nii --interp nearest --reg /Applications/freesurfer/average/mni152.register.dat
Thank you for your time,
Skyler
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