Dear Freesurfer support team,
Thank you very much for such a good software. I don't use it but I know it from our users at Southampton University.
I am trying to Install Freesurfer V 5.3.0 on our cluster in Southampton University but when I run a job on our cluster it always fails. I have checked all configurations files, I have looked to your manual many times but still can not figure out the problem. Could you please help me out with installation.
Some information =- cat $FREESURFER_HOME/build-stamp.txt => freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 -- which mri_convert => /local/software/rh53/freesurfer/5.3.0/freesurfer/bin/mri_convert
I have included my submitting bash script and also output file. Basically I am getting the error:
" mghRead(/home/mb4/test/free/track2010FS/21655/mri/nu.mgz, -1): could not open file mri_em_register: could not open input volume nu.mgz. "
I have also try to run "fixup_mni_paths" but it did not help. I have installed FS V4.0 and I did not have such a problem.
Could you please have a look to my output and give me some advises.
Thank you very much.
Maksym Bondarenko _________________________ High Performance Computing iSolutions Building : 2 Office 5045 University of Southampton