External Email - Use Caution
Doug,
I copied over files and ran using the -conf2hires flag, however, the orig.mgz/brainmask.mgz are resampled to 1mm isotropic not the native 0.8mm.
Using the -hires flag maintains the orig.mgz/brainmask.mgz at native 0.8mm resolution.
Is this expected when running -conf2hires?
Jim
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Greve, Douglas N.,Ph.D. Sent: Tuesday, October 15, 2019 11:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution
better to use a patch I created for the HCP, see https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/readm...
On 10/15/19 12:13 PM, Alexopoulos, Dimitrios wrote:
External Email - Use CautionWe have data acquired at 0.8mm isotropic and would like to maintain this resolution in the processing stream rather than FS resampling to 1mm.
Is the command to do this 'recon-all -hires -all'?
Are there any drawback to doing this?
Jim
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