External Email - Use Caution
This command includes the excludeid = 0
mri_segstats --slabel subject_ID lh $SUBJECTS_DIR/subject_ID/label/lh.cortex.label --i $SUBJECTS_DIR/subject_ID/surf/lh.pial_lgi --excludeid 0 --sum lh.aparc.pial_lgi_lh.stats
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Wednesday, September 09, 2020 12:13 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mean gyrification index
* External Email - Caution * I think that should work On 9/9/2020 12:59 PM, Alexopoulos, Dimitrios wrote:
External Email - Use Caution I have used this for mean GI per hemisphere:
mri_segstats --i lh.lgi.mgz --slabel subject lh $SUBJECTS_DIR/subject/label/lh.cortex.label --excludeid 0 --o lh.lgi.sum
Jim
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Wednesday, September 09, 2020 11:54 AM To: vittal korann vittalkorann@gmail.commailto:vittalkorann@gmail.com; freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mean gyrification index
* External Email - Caution * You can use mri_segstats with the --slabel option, specifying the ?h.cortex.label and using the gyrification as input On 9/9/2020 12:54 PM, vittal korann wrote:
External Email - Use Caution Thank you so much, Douglas.
Could you please guide me to obtain the global mean gyrification index for each subject?
With regards korann
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