External Email - Use Caution
Hello Priya, It could help to know,- the version of freesurfer you installed, e.g., the latest 7.3.2 release from https://secure-web.cisco.com/1zdcvVhqKzcbDdvruGd5f9eNe1UebLwxcHQNPPf-imCCfHd... if you used the pkg installer file, https://secure-web.cisco.com/1kDieI9mdZudxJbpCFL6WFWngUIQhFugSuxCTUgxkN4I7zm... what version of MacOS you are running- if you are on an Intel Mac or a new Mac with an M1 or M2 chip. Please make sure you have registered and obtained the freesurfer license.txt file by filling out the form, https://secure-web.cisco.com/1fpZEOUr_MAQGgEoaIOkzRF-3qUqa6N-GPoNFHsbrnuctCN... The thread you referenced, https://secure-web.cisco.com/1D0s4CKkxCu5d6CQKJUyf4knHMaxqpw-OaFbdce0DVPAKaX..., showed the crash went away for a user with a MacBook Pro if they unplugged their external monitor. This is - or at least was - a known problem with a 2nd monitor causing a segfault when trying to run some graphics programs. So try unplugging any external monitor if you are using a Mac laptop. I would try explicitly running the bash shell in your terminal window, but typing “bash” at the terminal prompt. You should then see the output, $ bash The default interactive shell is now zsh. To update your account to use zsh, please run `chsh -s /bin/zsh`. For more details, please visit https://secure-web.cisco.com/1weI0CySFCptz62exS6gCfA2Ymaa7qVQzIZURPdDJ1Yz2dG...; You can then set FS_LICENSE in your environment to point to the license.txt file. You can put license.txt in your home directory, e.g., wherever that path is,
userid@hostname:~> echo $HOME/Users/priya userid@hostname:~> export FS_LICENSE=$HOME/license.txtuserid@hostname:~> cat $FS_LICENSE< output deleted - just make sure the environment variable points to license.txt > Then setup the fressurfer environment, e.g., for the 7.3.2 release installed with the .pkg file, userid@hostname:~> export FREESURFER_HOME=/Applications/freesurfer/7.3.2userid@hostname:~> source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-darwin-macOS-7.3.2-20220803-878457d -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/7.3.2 FSFAST_HOME /Users/developer/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Users/developer/freesurfer/subjects TUTORIAL_DATA /Users/developer/tutorial_data MNI_DIR /Users/developer/freesurfer/mni WARNING: /Users/developer/freesurfer/fsl_507/bin does not exist. FSL_DIR /Users/developer/freesurfer/fsl_507
userid@hostname:~> which freeview/Applications/freesurfer/7.3.2/bin/freeview … try running freeview with no argument to see if it brings up an empty window … userid@hostname:~> freeview … try displaying a simple volume … userid@hostname:~> freeview $SUBJECTS_DIR/bert/mri/brain.mgz Let us know how it goes. - R. On Oct 5, 2022, at 03:11, priya padma <priya@phenomx.ai> wrote: External Email - Use Caution Hello Team,I just installed freesurfer and freeview using the methods mentioned in MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1JYUd4mMfSzih2QyO4E11xD88kcF1UC15qYki4ZPKRN2YmP... installation was successful and after creating the environment the freeview also opened but whenever I open any volume, freeview crashes and I get an error saying line 2: 6736 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"I followed the thread MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1LcCJqrQekIc5hnecCI_yYw-ueM-8XSvqnvS6VlRIPqSoNA... tried to move the terminal to the main laptop screen but still I get the same error. I am unable to open the sample data given along with freesurfer.Could you help me with this issue?-- Best RegardsPadma PriyaAI Developer PhenoMx, Inc.priya@phenomx.ai | (+82)10-5405-2685_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer