3 Nov
2014
3 Nov
'14
6:20 p.m.
Hi all,
I noticed that during skull stripping the standard recon-all pipeline uses option "-brain_atlas" in the routine "mri_watershed". However documentation of this argument cannot be found in the help section or on the website.
mri_watershed --help | less -p atlas https://surfer.nmr.mgh.harvard.edu/fswiki/mri_watershed?highlight=(atlas)
Is this an undocumented flag or simply a synonym for "-atlas". Does the "-brain_atlas" flag take an extra argument to specify the atlas?
Thanks, Tom
Specs: Mac OS X 10.8.5 freesurfer-Darwin-lion-stable-pub-v5.3.0
mri_watershed --version
stable5