can you send the matrix?
On 11/5/15 5:29 AM, Erik Lindberg wrote:
Dear Freesufer experts,
I have trouble loading a contrast matrix - however I am not sure if something is going wrong earlier ... and this is causing this problem.
Below is the error messages that I get plus the contrast matrix and the .fsgd file I am trying to run.
I checked this previous mesages on this topic - and excluded the possitility that it would be related to windows formating or something like that.
Can you see what is wrong? Would the most grateful for any advice on this
Thanks!
Error message:
Saving mask to rh.Abeta_Gender_Apoe_age.glmdir/mask.mgh
Reshaping mriglm->mask...
search space = 74490.928733
MatrixReadTxT: could not scan value [1][1], ERROR: loading C AAA.mtx
Abeta_Gender_Apoe_age.fsgd:
GroupDescriptorFile 1
Title Abeta_Apoe_Gender
Class AbetaNegativeApoeNegativeMen
Class AbetaNegativeApoeNegativeWomen
Class AbetaNegativeApoePositiveMen
Class AbetaNegativeApoePositiveWomen
Class AbetaPositiveApoeNegativeMen
Class AbetaPositiveApoeNegativeWomen
Class AbetaPositiveApoePositiveMen
Class AbetaPositiveApoePositiveWomen
Variables Age
Input 0d93d314-d7fe-4615-9b00-ea8011255a81 AbetaPositiveApoeNegativeWomen 9.6133333333
Input 36643d8d-caf1-47be-9025-e5662092a0c1 AbetaPositiveApoeNegativeWomen 5.6133333333
Input 12ee5f59-b7de-431c-9c93-fc737465cf24 AbetaPositiveApoePositiveWomen 6.6133333333
AAA.mtx: {1 1 1 1 -1 -1 -1 -1}/4 0
mris_preproc --fsgd Abeta_Gender_Apoe_age.fsgd \
--cache-in thickness.fwhm10.fsaverage \
--target fsaverage --hemi lh \
--out lh.Abeta_Gender_Apoe_age.10.mgh
mris_preproc --fsgd Abeta_Gender_Apoe_age.fsgd \
--cache-in thickness.fwhm10.fsaverage \
--target fsaverage --hemi rh \
--out rh.Abeta_Gender_Apoe_age.10.mgh
mri_glmfit \
--y lh.Abeta_Gender_Apoe_age.10.mgh \
--fsgd Abeta_Gender_Apoe_age.fsgd doss \
--C AAA.mtx \
--surf fsaverage lh \
--cortex \
--glmdir lh.Abeta_Gender_Apoe_ager.glmdir
mri_glmfit \
--y rh.Abeta_Gender_Apoe_age.10.mgh \
--fsgd Abeta_Gender_Apoe_age.fsgd doss\
--C AAA.mtx \
--surf fsaverage rh \
--cortex \
--glmdir rh.Abeta_Gender_Apoe_age
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