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Dear Freesurfer experts, I am trying to process a dataset with a longitudinal design. However, after building the template, at the “recon-all -long” command I got this error:
longmc Done /Users/angelafavaro/Desktop/Aachen/subj201.long.template4/mri \n cp -f --preserve=timestamps /Users/angelafavaro/Desktop/Aachen/template4/mri/brainmask.mgz ./brainmask_template4.mgz \n cp: illegal option -- - usage: cp [-R [-H | -L | -P]] [-fi | -n] [-apvXc] source_file target_file cp [-R [-H | -L | -P]] [-fi | -n] [-apvXc] source_file ... target_directory ERROR: Darwin iMac-di-Angela.local 19.0.0 Darwin Kernel Version 19.0.0: Thu Oct 17 16:17:15 PDT 2019; root:xnu-6153.41.3~29/RELEASE_X86_64 x86_64
recon-all -s subj201.long.template4 exited with ERRORS at Sat May 23 03:47:31 CEST 2020
For more details, see the log file /Users/angelafavaro/Desktop/Aachen/subj201.long.template4/scripts/recon-all.log
Thank you for any help!
Angela