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Dear Brouce,
thanks again. I would like exactly how to set mri_vol2label for subcortical regions as the way I used give me all the values of the first column equal to -1. This is a problem when I want to obtain obtain the centroid of the ROI using mri_surfcluster as I get an empty file.
Hope Doug can help me.
Thanks Lucia
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Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.billeci@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
On 2 May 2018, at 16:01, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Lucia
can you cc the list so others can answer? You can't get a surface-based label for a subcortical region as they aren't on (or close) to the surrface. I think mri_vol2label is the right binary to create a volumetric ROI for each one, but Doug will know cheers Bruce
On Wed, 2 May 2018, Lucia Billeci wrote:
External Email - Use CautionDear Bruce, thanks for your answer. I would like to obtain .label file for each subcortical region. I have tried the commands I reported in the previous messages but probably they are not correct. Could you please indicate me the correct way to have the .label file for subcortical regions? I am not sure if using mri_vol2label is the right way or maybe there is another strategy. Thanks regards Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.billeci@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
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