Hi Wan,
is rh.annot.aparc a directory? It shouldn't be, but it looks like it from your log file. What machine type are you running on? Can you also send the output of parcellate_subject?
cheers, Bruce
On Fri, 28 Jan 2005, Wan Park wrote:
Hi, while I am solving the problems with the cutting planes, I am doing parcellation with the subjects that went through. After doing parcellate_subject cf1
I wanted to visualize it so I wrote tksurfer cf1 rh inflated
and then I went to file>labels>annotation and wrote
/Users/../Volumes/stem/freesurfer/subjects/cf1/label/rh.aparc.annot
but nothing happened and this error occured:
[autologins-Computer:stem/freesurfer/subjects] wanpark% tksurfer cf1 rh inflated surfer: current subjects dir: /Users/../Volumes/stem/freesurfer/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /Volumes/stem/freesurfer/subjects surfer: /Users/../Volumes/stem/freesurfer/subjects/cf1/mri/T1/COR-.info ltMNIread: could not open file /Users/../Volumes/stem/freesurfer/subjects/cf1/mri/transforms/ talairach.xfm No such file or directory surfer: Talairach xform file not found (ignored) surfer: vertices=187213, faces=375476 surfer: using interface /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tksurfer.tcl Reading /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tkm_common.tcl Reading /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tkm_wrappers.tcl Reading /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/fsgdfPlot.tcl Couldn't load libtclfsgdf.dylib. Reading /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tkUtils.tcl Read /Users/wanpark/Desktop/FreeSurfer/freesurfer/surface_labels.txt, found 95 structures Successfully parsed tksurfer.tcl % could not read annot file /Users/../Volumes/stem/freesurfer/subjects/cf1/label/rh.aparc.annot/ Not a directory surfer: WARNING: no labels imported; annotation was empty reading colortable from annotation file... colortable with 85 entries read (originally /space/neo/5/recon/christophe/Simple_surface_labels2002.txt) reading colortable from annotation file... *** malloc_zone_calloc[1759]: arguments too large: 3221210976,520 CTABreadFrom: could not allocate -1073756320 bin table Cannot allocate memory Bus error
do you have any suggestions?
thanks,
wan